Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (2024)

by KetoFocus.com

4.9 Stars (15 Reviews) 18 Comments

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These keto pumpkin cupcakes are a MUST HAVE during the Fall. Spongy pumpkin flavored cupcakes are topped with a sweet and tangy cream cheese frosting.

Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (1)

Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (2)

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Nutrition Facts

Serving Size:
1 cupcake

16

Servings

262

Calories

23.2g

Fat

5.1g

Protein

4.5g

Net Carb

13.3g

Total Carbs

Hey, I love cheesecake and I love pumpkin pie, these keto pumpkin cupcakes with cream cheese frosting feels like a good blend of both!

Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (4)

Keto pumpkin recipes is a must for me during the Autumn months. If you love pumpkin spice, these cupcakes need to be first on my baking list of Fall recipes.

The sugar-free cream cheese frosting on top of these low carb pumpkin cupcakes is a sweet surprise and nice compliment to the spongy cake. The combination of flavors from the pumpkin cupcake and cream cheese remind me of the classic pumpkin roll – except these are way easier to make and portable, so you can take one of these delicious muffins with you on the go for a quick treat.

Table of Contents [ click to toggle ]
  • How to make keto pumpkin cupcakes
  • Recipe Details
    • Watch the recipe video
    • Keto Pumpkin Cupcakes Ingredients
    • Keto Pumpkin Cupcakes Directions
  • Similar recipes others love
  • Is pumpkin keto?
  • Cream cheese frosting
  • Macros without the frosting
  • Storage information
  • FAQs

How to make keto pumpkin cupcakes

  1. Make brown butter. Heat butter in a saucepan, swirl it occasionally as it melted as starts to brown. Brown butter creates the most incredible flavor and nutty finish to these cupcakes.
  2. Mix dry ingredients – Almond flour, coconut flour, baking powder, baking soda, salt, cinnamon, turmeric and nutmeg.
  3. Mix in wet ingredients – Add in pumpkin puree, eggs, sweeteners and browned butter.
  4. Combine dry and wet ingredients until smooth.
  5. Pour into a muffin tray lined with muffin liners and bake for 20-25 minutes.
  6. Make sugar free cream cheese frosting by combing cream cheese, butter, vanilla extract and powdered erythritol or your favorite sweetener.
  7. Decorate your cupcakes with the frosting.

Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (5)

Key ingredients & substitutions

  • Brown butter – Adds a nutty flavor to these earthy Fall cupcakes.
  • Keto flours – In this pumpkin cupcake recipe, almond flour and coconut flour are used. The combination of the two produces a flour that bakes similar to all-purpose flour. If you have a nut allergy, try substituting the almond flour with sunflower seed flower.
  • Spices – To get that classic Fall pumpkin spice flavor, we add cinnamon, turmeric and nutmeg. Pumpkin pie spice can be substituted for these spices.
  • Sugar free maple syrup – Adds a hint of maple flavoring to these cupcakes. If you don’t have maple syrup, try adding a touch more sweetener.

Keto Pumpkin Cupcakes (Muffins) Recipe Video

Keto Pumpkin Cupcakes Ingredients

  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (7) 1/2 cup unsalted butter
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (8) 1 1/2 cups almond flour
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (9) 1/2 cup coconut flour
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (10) 2 teaspoons baking powder
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (11) 1 teaspoon baking soda
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (12) 1 1/4 teaspoon salt
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (13) 2 teaspoons cinnamon
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (14) 1/2 teaspoon turmeric
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (15) 1/4 teaspoon nutmeg
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (16) 1 1/2 cups pumpkin puree
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (17) 3 eggs
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (18) 1/4 cup brown sugar-free sweetener
  • Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (19) 1/2 cup sugar-free maple syrup

Keto Cream Cheese Frosting Ingredients

Keto Pumpkin Cupcakes Directions

  • STEP

    1

    Preheat oven

    Preheat oven to 350 degrees. Line a muffin tray with muffin liners.

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (24)
  • STEP

    2

    Make brown butter

    Heat butter in a small saucepan over medium heat. Cook the butter, swirling occasionally, until the butter has melted, starts to brown and smells nutty (about 5 minutes). Remove from the heat and set aside to cool.

    Ingredients

    • 1/2 cup unsalted butter
    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (25)
  • STEP

    3

    Mix dry ingredients

    In a medium bowl, whisk together flours, baking powder, baking soda, salt and spices. Set aside.

    Ingredients

    • 1 1/2 cups almond flour
    • 1/2 cup coconut flour
    • 2 teaspoons baking powder
    • 1 teaspoon baking soda
    • 1 1/4 teaspoon salt
    • 2 teaspoons cinnamon
    • 1/2 teaspoon turmeric
    • 1/4 teaspoon nutmeg
    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (26)
  • STEP

    4

    Mix wet ingredients

    In a large bowl, beat the eggs, pumpkin, golden monkfruit and syrup until smooth.

    Ingredients

    • 1 1/2 cups pumpkin puree
    • 3 eggs
    • 1/4 cup brown sugar free sweetener
    • 1/2 cup sugar free maple syrup
    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (27)
  • STEP

    5

    Combine all

    Mix in the dry ingredients along with the browned butter.

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (28)
  • STEP

    6

    Bake

    Pour into a muffin pan lined with muffin liners. Bake at 350 degrees for 20-25 minutes or until they start to brown on top. Remove from the oven and let cool completely before frosting.

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (29)
  • STEP

    7

    Cream cheese frosting

    To make the cream cheese frosting, add cream cheese, butter and vanilla to a medium bowl. Whip until fluffy and smooth. Slowly add in the powdered erythritol and mix until fluffy. Spread or pipe on top of each cupcake. You can poke a hold in the top of the cupcake to insert the cream cheese frosting into the center of the cupcake.

    Ingredients

    • 8 oz cream cheese, softened
    • 1/2 cup unsalted butter, softened
    • 1 teaspoon vanilla extract
    • 1/2 cup powdered sugar free sweeetener
    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (30)

Similar low carb recipes

Others who were looking for "Keto Pumpkin Cupcakes" were also interested in these recipes:

  • Keto Hostess Cupcakes
  • Keto Pumpkin Pecan Muffins
  • Keto Pecan Pie Muffins
  • Keto Cinnamon Rolls
  • Gluten Free Monkey Bread

Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (31)

Is pumpkin keto?

Pumpkin is keto approved! Yes, it’s a squash and contains higher carbs compared to other keto approved vegetables. But there are 7 net carbs for 1/2 cup of pumpkin puree.

This recipe contains 1 1/2 cups of pumpkin puree, so that amounts to 1.4 net carbs per keto pumpkin cream cheese cupcake. To me, it’s worth it to sacrifice 1.4 gram carbs to be able to enjoy pumpkin flavor during the Fall months.

Cream cheese frosting

The second part of these delicious keto pumpkin cupcakes is the sugar free cream cheese frosting. It’s easy to prepare and you have a couple of options when it comes to application.

  • You can simply frost the top of the muffin by piping some on top using a pretty star tip or which ever piping tip you want to use.
  • Or you can poke a hole in the center of the muffin and pipe in the keto cream cheese frosting into the center of the cupcake. Then continue to pipe frosting on the outside to cover the hole.

Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (32)

Macros without the frosting

If you want to make these keto pumpkin cupcakes without the cream cheese frosting on top, the macros will be slightly different. I’m providing those because I have had a few people ask this question.

For one cupcakes,
Calories: 162
Fat: 12.7 g
Net Carbs: 4.3
Protein: 4.1 g

Storage information

It’s best to store these pumpkin cupcakes in an air tight container so they don’t dry out. They should stay fresh for about 3 days.

When you bake with keto sweeteners, they tend to dry out the baked good faster than regular sugar because they don’t hold on to moisture as well as regular sugar does.

Keto Pumpkin Cupcakes: FAQS

How to you get moist cupcakes?

Besides adding ingredients like butter to add moisture, it's also about how you mix your cake batter. Mix just enough to get air bubbles to form, but don't overmix or you will get a dense cake.

What's the difference between browned butter and regular butter?

Brown butter is butter that is melted and browned by heating on the stovetop until the milk solids are cooked and have a nutty, caramel flavor and aroma.

What's the difference between a muffin and a cupcake?

Cupcakes have a soft spongy texture while muffins tend to be moist and denser.

Nutritional information & Macros

Nutrition Information

Keto Pumpkin Cupcakes

Servings: 16

Amount Per Serving
Calories 262
Fat 23.2g
Protein 5.1g
Total Carbs 13.3g
Net Carbs 4.5g

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  1. These muffins are amazing. I have made them several times and everyone really enjoys them. Thank you.

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (37)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (38)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (39)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (40)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (41)

    Reply

  2. Can you tell me the total carbs on this please. I know your husband is working on adding them to your recipes, which we appreciate, but I so want to make this asap. ?
    Thank you so much

    Reply

    1. We updated all the recipes with total carbs

      Reply

  3. Please make these recipes so that you can pin them on Pinterest instead of just print.

    Reply

    1. You can pin any photo. Just hover your mouse or finger over the photo you want to pin and you will see the Pinterest icon pop up. This only works on the photos below the recipe.

      Reply

      1. Got it pinned. Making them right now. Thank you.

        Reply

  4. Can you tell me the total sodium per cupcake please and thank you?

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (42)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (43)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (44)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (45)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (46)

    Reply

    1. They are about 275 mg per muffin.

      Reply

  5. Best way to put this is Heaven! I love these so much.

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (47)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (48)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (49)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (50)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (51)

    Reply

    1. Hi Dawn! I am glad you liked it! And thank you for all of your positive comments throughout my recipes! They always make my day! Annie

      Reply

  6. Absolutely AMAZING ! I haven’t tried any of your recipes that weren’t wonderful, but these are the best so far !

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (52)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (53)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (54)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (55)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (56)

    Reply

  7. I think this is my 3rd time making these. I thought I have left a comment before… Just wanted to say these are so yummy and I want to try some more of your recipes. I will say, it’s hard to tell when the muffins are done in the oven because they stay pretty dense and wet in the center, but once they have been refrigerated they seem fine. I kept mine in the oven a bit longer than stated. My two year old loves them too 🙂

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (57)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (58)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (59)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (60)

    Reply

  8. One of the BEST muffin (even cupcake) keto recipes I have tried! Long time internet keto recipe maker, first time reviewer. They are that good.
    Perfect for the holidays for my husband and I to indulge while the rest of the family eats pie and whatever else. Will be making these all year!
    Thank you!! 🙂

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    Reply

  9. I realize I’m a year behind this recipe, but I’m interested in making this in a loaf pan. Do you know if this recipe will fit into 1 loaf pan? Temperature and timing?

    I love watching your YouTube videos!

    Reply

    1. I haven’t tried it in a loaf pan, but I would bake at the same temperature for longer. Maybe 40-55 minutes. Bake until it is set on top or you insert a knife in the center and it comes out clean.

      Reply

  10. Is there another option or substitute for the no sugar maple syrup?

    Thank you!

    Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (66)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (67)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (68)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (69)Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (70)

    Reply

    1. You can add more brown sugar free sweetener instead. Maybe another 1/4 cup.

      Reply

      1. Thank-you, I just came to the comments to ask that question because I can’t have maple and was wondering if I could just leave it out.

        Reply

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Keto Pumpkin Cream Cheese Muffins Recipe - Ketofocus (2024)

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